RNA Secondary Structure Prediction Tools

Followings are the secondary structure prediction tools

CentroidFold and other tools :  

https://www.ncrna.org/

ViennaRNA Web Services by Institute for Theoritical Chemistry, University Wien:

http://rna.tbi.univie.ac.at/

The mfold Web Server by the RNA Institute, Collage of Arts and Sciences, University At Albany:

http://unafold.rna.albany.edu/?q=mfold/RNA-Folding-Form

Dr. David Mathews’ Lab and various tools :

http://rna.urmc.rochester.edu/index.html

http://rna.urmc.rochester.edu/RNAstructureWeb/